I'm trying to apply a patch on the Touchpad to the Clock app - unfortunately, the JavaScript files for this app have CRLF line endings.

It seems that both WOQI and Internalz mangle the patch prior to installing it (it's a very simple patch, just deleting one line). All the hunks fail as a result.

Is there a way to work around this to get a properly installed patch?

I can novaterm the patch over and apply it manually with no problems.